BedEntry Methods Sum-up Table¶
BedEntry Methods¶
| Method Name | Description | First Version |
|---|---|---|
| Properties | ||
chr() |
Property: chromosome | 0.0.1 |
sCoord() |
Property: start coordenate | 0.0.1 |
eCoord() |
Property: end coordenate | 0.0.1 |
extraFields() |
Property: extra Fields | 0.0.1 |
| Class Methods | ||
addExtraField() |
Add Extra Fields | 0.0.1 |
hasExtraFields() |
Has extra Fields? | 0.0.1 |
lenExtraFields() |
Number of extra fields | 0.0.1 |
isOverlapping() |
Feature A overlaps Feature B? | 0.0.1 |
addLeftClip() |
Add Left Clip | 0.0.2 |
addRightClip() |
Add Right Clip | 0.0.2 |
addClips() |
Add Both Clips | 0.0.2 |
shift() |
Shift Region | 0.0.2 |
binRegion() |
Split a BedEntry in nBins | 0.0.3 |
extractLeftSide() |
Reduces BedEntry to left most bp | 0.0.3 |
extractRightSide() |
Reduces BedEntry to right most bp | 0.0.3 |
getReadsOverlapping() |
Returns Overlapping reads From BAM | 0.0.6 |
| Build-in functions | ||
__eq__() |
Build-in function: A equals B | 0.0.1 |
__ge__() |
Build-in function: A greater or equal than B | 0.0.1 |
__gt__() |
Build-in function: A greater than B | 0.0.1 |
__lt__() |
Build-in function: A lower than B | 0.0.1 |
__le__() |
Build-in function: A lower or equal than B | 0.0.1 |
__len__() |
Build-in function: Feature’s Size | 0.0.1 |
__str__() |
Build-in function: String Representation | 0.0.1 |
BedEntry6 Methods¶
| Method Name | Description | First Version |
|---|---|---|
| Properties | ||
chr() |
Property: chromosome | 0.0.1 |
sCoord() |
Property: start coordenate | 0.0.1 |
eCoord() |
Property: end coordenate | 0.0.1 |
name() |
Property: name | 0.0.1 |
score() |
Property: score | 0.0.1 |
strand() |
Property: strand | 0.0.1 |
extraFields() |
Property: extra Fields | 0.0.1 |
| Class Methods | ||
addExtraField() |
Add Extra Fields | 0.0.1 |
hasExtraFields() |
Has extra Fields? | 0.0.1 |
lenExtraFields() |
Number of extra fields | 0.0.1 |
isOverlapping() |
Feature A overlaps Feature B? | 0.0.1 |
addLeftClip() |
Add Left Clip | 0.0.2 |
addRightClip() |
Add Right Clip | 0.0.2 |
addClips() |
Add Both Clips | 0.0.2 |
shift() |
Shift Region | 0.0.2 |
binRegion() |
Split a BedEntry in nBins | 0.0.3 |
extractLeftSide() |
Reduces BedEntry to left most bp | 0.0.3 |
extractRightSide() |
Reduces BedEntry to right most bp | 0.0.3 |
getReadsOverlapping() |
Returns Overlapping reads From BAM | 0.0.6 |
| Build-in functions | ||
__eq__() |
Build-in function: A equals B | 0.0.1 |
__ge__() |
Build-in function: A greater or equal than B | 0.0.1 |
__gt__() |
Build-in function: A greater than B | 0.0.1 |
__lt__() |
Build-in function: A lower than B | 0.0.1 |
__le__() |
Build-in function: A lower or equal than B | 0.0.1 |
__len__() |
Build-in function: Feature’s Size | 0.0.1 |
__str__() |
Build-in function: String Representation | 0.0.1 |